Logic comes from our basic survival needs, all animals have a basic capacity for reason, our capacity for logic is simply on a far more complex level due to our much larger brain size.
Morality comes from society, from us, some of it is innate, like protecting your newborns, some of it is adaptive, like forming large groups and dividing up tasks to better our society.
The universe? Well we're not sure yet, BUT we are not afraid of not being sure, it is simply just another mystery for us to explore and figure out.
It is not faith, I do not claim "I KNOW" where the universe comes from, but you claim the you know 100% for sure that god created it.
That is the difference between religion and science, religion is afraid of lack of knowledge and denies anything that might contradict it, on the other hand science LOVES what we don't know because it guides it into the direction of more knowledge and more progress and then tries to disprove itself at every step.
No science is science unless it provides a circumstance under which it is disprovable.
No religion is religion unless it demands complete and utter faith while discarding any facts that contradict it.
"Lighthouses are more useful than churches."- Ben Franklin
"Religious bondage shackles and debilitates the mind and unfits it for every noble enterprise."- James Madison
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